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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Pat Farmer | 14th | Manny Garcia | 20th | 22nd |
| First Basemen | Dustin Weber | 8th | Kevin Burns | Tied for 13th | 14th |
| Second Basemen | John Williams | 11th | Elton Evans | 6th | 6th |
| Third Basemen | Kasey Tuepker | 21st | Tied for 18th | 23rd | |
| Shortstops | Joe Jennings | 10th | Jonathan Melfi | 5th | 7th |
| Left Fielders | Luis Carrillo | 22nd | Tied for 17th | 24th | |
| Center Fielders | Tom Johnson | 17th | Dustin Malone | Tied for 10th | 16th |
| Right Fielders | Eddie Bonomo | 7th | Billy Newman | Tied for 8th | 11th |
| Starting Pitchers | Edgar Flores | 15th | Tied for 7th | 17th | |
| Relievers | Rafael Medina | 13th | Jeff Bolt | 22nd | 21st |
| Closers | Tyler Betro | 11th | Jeff Bolt | 12th | 18th |
